#    This program is free software: you can redistribute it and/or modify
#    it under the terms of the GNU General Public License as published by
#    the Free Software Foundation, either version 3 of the License, or
#    (at your option) any later version.
#
#    This program is distributed in the hope that it will be useful,
#    but WITHOUT ANY WARRANTY; without even the implied warranty of
#    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#    GNU General Public License for more details.
#
#    You should have received a copy of the GNU General Public License
#    along with this program.  If not, see <http://www.gnu.org/licenses/>.
#
#    Code base of Animesh Sharma [ sharma.animesh@gmail.com ]

#!/usr/bin/perl -w
use strict;
use Bio::SeqIO;
my $fi=shift @ARGV;
my $fo=shift @ARGV;

 
# opendir
 my $input = new Bio::SeqIO(-format =>'FASTA',
			    -file   => $fi);
 my $output = new Bio::SeqIO(-file => ">$fo",
			     -format => 'swiss');
 while( my $seq = $input->next_seq) {
  $output->write_seq($seq);
 }
